PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940106.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 235aa    MW: 25756.3 Da    PI: 8.0623
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940106.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.3e-18163197135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_010940106.1 163 CTHCLSHKTPQWRAGPLGPKTLCNACGVRFKSGRL 197
                     *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.121157193IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-15157211IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-13161195IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.95E-14161221No hitNo description
CDDcd002022.41E-13162209No hitNo description
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
PfamPF003201.5E-15163197IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDISTDASVS GGPLACPLLG EFVPGETTEG EEDVSLEWLS IYVEDCLSGT TSYTSQPLPP  60
PTTISHDAPP PKPPTTKTSS SSFQDLAIPA KARTKRRRVT TPKELASQDA LLFHQTCWLA  120
DSELILPKKE QEDKAPAVEL LERGGGEGGE RIGKEQQQQI RRCTHCLSHK TPQWRAGPLG  180
PKTLCNACGV RFKSGRLLPE YRPAKSPTFV SYKHSNSHKK VMEMRMMAIP SSQSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940106.11e-174PREDICTED: GATA transcription factor 2-like
TrEMBLM0SQV23e-68M0SQV2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P21390_0017e-68(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-34GATA transcription factor 4